Scripts

Script Description
assemblathon_stats.pl  Format conversions and filtering of the vcf files
batch_genscan.pl Rename headers of a fastq file
extract_region.pl Extracts the regions of a fasta file with flanking regions from an assembly fasta file
fastq2fasta.pl ISMU pipeline – http://hpc.icrisat.cgiar.org/ISMU/
filterByLength.py Format conversions and filtering of the vcf files
genomeLength.py Rename headers of a fastq file
getReadLengths.py Extracts the regions of a fasta file with flanking regions from an assembly fasta file
gff2gtf.py ISMU pipeline – http://hpc.icrisat.cgiar.org/ISMU/
NCBI_retrieval.pl Format conversions and filtering of the vcf files
seqtk Rename headers of a fastq file
splitfasta.py Extracts the regions of a fasta file with flanking regions from an assembly fasta file
vcfutils.pl ISMU pipeline – http://hpc.icrisat.cgiar.org/ISMU/
renamefq.py Format conversions and filtering of the vcf files
extract_flanking_regions.pl Rename headers of a fastq file
ISMU_v1.0.tar.gz Extracts the regions of a fasta file with flanking regions from an assembly fasta file
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